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support for parallel by preloading data #150

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merged 25 commits into from
Nov 20, 2023
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Tim-Yu
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@Tim-Yu Tim-Yu commented Nov 15, 2023

Hi,

Related to issue #149

is there a particular reason to use a CompressedGRangesList instead of a standard GRAngesList?

Yes, there are two reasons: 1) to ensure that the data is from cdsBy() etc.; 2) for more memory efficiency.

I have updated the remaining coordinate mapping functions to support parallel process calls, along with the corresponding unit tests.

Additionally, I noticed a minor typo in 2db48b6 and a function error in e5f4160.

Best,

Boyu

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@jorainer jorainer left a comment

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Thanks for the (quite extensive) contribution! Please address the two small requests to ensure the unit tests run through. And then please also add yourself as an author to the DESCRIPTION.

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@jorainer jorainer left a comment

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Thanks @Tim-Yu ! I'll merge now and push to BioC.

@jorainer jorainer merged commit 22c6704 into jorainer:devel Nov 20, 2023
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2 participants